Preheat oven to 350 degrees
In a large skillet, melt 2 tablespoon butter over medium heat
Add shallots and saute until soft and translucent, about 3 - 5 minutes
Add garlic and saute for 1 minute, stirring continuously to prevent burning
Add frozen spinach and the water
Cook the spinach until thawed, stirring occasionally
Set aside
Whisk the eggs in a medium sized mixing bowl
Add the cheeses, pepper, thyme and nutmeg
Add the spinach mixture to the bowl
Stir to combine and all is incorporated
Grease the mini muffin tins with remaining teaspoon of butter
Fill each muffin tin ¾ full with the mixture
Bake for 20-25 minutes or until the sides appear slightly browned
Once cool, gently run a knife around the circumference of each muffin to remove
To store, place in small airtight containers to refrigerate or freeze.